Workflow How-Tos
Reporting
- Checking and Reporting the Project Creation Byos Version
- Multi-Document Report
- How can I add average values and standard deviations to a pivot table in a report?
- How to add custom images and company logos in Reports?
- How to export a Report to PDF, Excel, Image or CSV?
- How to resize Report Plots in Byos ?
Intact
- Trace Peak Settings for Intact and Chromatography Workflows
- Intact deconvolution with isotopic resolution
- Native-MS Deconvolution Advanced Commands
- Oligonucleotide Building Blocks Basics
- Charge Probability Scaling in Intact and Oligo Projects
- Automated Annotations in Deconvoluted Spectra
Peptide How-Tos
- Asparagine Deamidation Quantified
- Protease: Default and Custom Cleavage Sites
- Quantifying glycation
- MS1 and MS2 Scan Summing
- Multiple Digest Peptide Projects
- Controlling how protein homology is represented in Byos®
Peptide Insights
- Theoretical Isotope Distribution
- MS Scan Extraction
- Why are some of the letters within rows in the Peptide table black and some blue (Byologic)?
- How to show undetected peptides using PTM / peptides workflows?
- How does Byos identify CDRs, and how can I customize it?
- How to filter and update Protein Coverage view in Peptide workflows
Chromatogram & Released Glycans
Application Notes
Byonic
- Byonic MS/MS instrument parameters
- Byonic™ Modification Fine Control
- Processing Data-Independent Acquisition (DIA) Data in Byonic/Byos
- What do the different options mean in the Protein FDR field in the Protein Output section of the workflows containing a Byonic search?
- Non-Standard Amino Acids in Byonic and Byos Peptide Workflows
- MS2 Spectrum Annotations
Byos General
Byosphere General
- Using Metadata and Deep Queries in Byosphere®
- Is there an SKO or a public API set for Byosphere?
- Add or replace new users
- Add (activate) Byosphere license
- What kinds of user roles are available in Byosphere?
- Byosphere New Contributor Setup and Byos for Byosphere Client Download
Installation & Activation
- How to install Byonic into Thermo Fisher Scientific’s Proteome Discoverer software as a node?
- Byos System Requirements
- Activate your Byos license
- Offline activation
- Activation ID copies exceeds available copies
- Offline activation/return: Response is out of order with previous responses.
Troubleshooting
- Issue Reporting for Byos
- Byonic Issue Reporting
- Byonic error message -99: No statistically significant identifications
- This application requires a Java Runtime Environment (JRE). Please install Java, either OpenJDK version > 11.0.2 or Oracle JRE version > 1.8.0
- De Novo Sequencing (Supernovo) Troubleshooting: Search Times
- How to convert raw files from Agilent ChemStation for processing in Byos