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  3. Byonic

Byonic

FAQ about Byonic stand alone and Byonic node in Byos&Byosphere workflows

  • Top-down searching using Byonic™
  • Byonic Modifications list options for MSMS search
  • Discriminate Leucine and Isoleucine in Byonic
  • Utilizing MS/MS Filtering
  • How to run Protein Metrics Preview?
  • Byonic MS/MS instrument parameters
  • Byonic™ Modification Fine Control
  • Processing Data-Independent Acquisition (DIA) Data in Byonic/Byos
  • How to display internal fragment ions in Byonic
  • Custom Glycan Libraries for Peptide and Byonic Workflows
  • Protease: Unspecified, Non-Specific, & Unlimited Missed Cleavage Searches
  • Show All N-glycopeptides
  • Off-by-X
  • What do the different options mean in the Protein FDR field in the Protein Output section of the workflows containing a Byonic search?
  • Non-Standard Amino Acids in Byonic and Byos Peptide Workflows
  • MS2 Spectrum Annotations
  • Custom Crosslink Searches Including Searches Between Multiple Amino Acids
  • How does Byonic/Byos treat enzymatic cleavages adjacent to proline residues?
  • How do I run multiple searches via the Batcher?
  • What's Preview? How do I use it?
  • How should I run Byonic?
  • How to set MSMS digestion search using Byonic
  • Why is Byonic better?
  • Decoy handling in the Byonic search engine.