By default, the PTM report templates in Byos do not contain the Plots tab. This is because plot generation can slow down the process, especially for projects that contain large numbers of identified peptides.
It is possible to add the plots tab to a report by selecting Tabs and Add plots:
Note: in order to reduce the time taken to generate plots, it's recommended to filter the results prior to selecting this option.
In the default PTM project the following information will be displayed for every peptide:
The type of information displayed in the plots tab can be customized by selecting Edit and Current tab settings. The Template editor can be accessed through the Edit plot template option:
Once the template editor is open, the Short Codes option can be used to add a variety of different parameters and plots to the report. In the example shown below, the report has been configured to show the Mass Sequence Table which shows theoretical and observed fragment ions: