Zoomed-in plot segments can be automatically generated during project creation within the intact mass workflow. This feature can be enabled under processing nodes -> mass area and relative intensity options -> generate zoomed-in segments. The user can specify between generating segments centered on reference or observed masses as well as the specified segment width.
OBSERVED MASSES: The latter generates around observed local maxima (there can be more than 1 per spectrum).
REFERENCE MASSES: The former generates zoom views around all of the protein masses defined in the project (but not protein+delta mass).