MS scan extraction is enabled by selecting the icon . This displays isotope values derived from the XIC plot. When enabled, a blue vertical line appears in the XIC plots view.
As the line is dragged across the XIC plot, the Isotope plots view is updated to show the MS scan (yellow peaks) for that XIC time value.
Two new icons appear on the Isotope plots menu bar in this mode: The icon clears the extracted MS
scan (yellow peaks) and restores the original isotope plots (blue peaks). The icon saves the extracted MS scan (yellow peaks) to the project document.